species:   Rhsol
pid:       PID0519
parent:    Rhi-milR-9
paralog:   
locus:     KB317712.1:145370-145464
matures:   ['ACAAUGUGGUCAAGGUCUCUG', 'GACCCUUUGGUGUUCAUUGUGC']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317712.1:145370-145464

6 out of bounds
179 alignments
28 proper strand
28 stranded perfect matches

       *************************                             **************************        
AGAGUUCACUACAAUGUGGUCAAGGUCUCUGCACCAUCCACUUUUUGGAAACCUUGUUAAGGCAGACCCUUUGGUGUUCAUUGUGCUUAAACCUG
((.(((...(((((((...((((((..(((((....((((.....))))............)))))..))))))....)))))))....))))).
----------ACAAUGUGGUCAAGGUCUCUG---------------------------------------------------------------- l=21 a=0 c
----------------------------------------------------------------GACCCUUUGGUGUUCAUUGUGC--------- l=22 a=0 c*
---------UACAAUGUGGUCAAGGUCUCUGC--------------------------------------------------------------- l=23 a=5 ma
---------------------------------------------------------------AGACCCUUUGGUGUUCAUUGUGCU-------- l=24 a=0 ma*

-----------------------------------------------------UUGUUAAGGCAGACCCUUUGG--------------------- l=21 a=1 
---------------------------UCUGCACCAUCCACUUUUUGG----------------------------------------------- l=21 a=3 
-------------------------UCUCUGCACCAUCCACUUUUUGG----------------------------------------------- l=23 a=1 
-------------------UCAAGGUCUCUGCACCAUCCACUU---------------------------------------------------- l=24 a=1 
-------------AUGUGGUCAAGGUCUCUGCACC------------------------------------------------------------ l=22 a=1 
------------AAUGUGGUCAAGGUCUCUGC--------------------------------------------------------------- l=20 a=1 
------------AAUGUGGUCAAGGUCUCUGCAC------------------------------------------------------------- l=22 a=3 
----------ACAAUGUGGUCAAGGUCUCUGCAC------------------------------------------------------------- l=24 a=1 
---------UACAAUGUGGUCAAGGUCUCUG---------------------------------------------------------------- l=22 a=5 
---------UACAAUGUGGUCAAGGUCUCUGC--------------------------------------------------------------- l=23 a=5 (ma)
---------UACAAUGUGGUCAAGGUCUCUGCA-------------------------------------------------------------- l=24 a=4 
------CACUACAAUGUGGUCAAGGUCUCUG---------------------------------------------------------------- l=25 a=1 
--AGUUCACUACAAUGUGGUCAAGG---------------------------------------------------------------------- l=23 a=1 

mb-01111
ax-1001011
ku-01
ss-101111001100
fn-101
